CorreLogo Submission Form: example 5S loop E region

Home Small example (tRNA anticodon) Loop E region Large example(tRNA) Help

Quickstart:

All you probably have to do in order to run this example is to click "Submit Query" at the bottom of this page. If you want to run your own set of sequences or you want to customize the output, enter values into the sections one to three of the form below (sections 2 and 3 are optional). For more detailed information consult our help page.

Background of example sequences:

The sequences provided in this example correspond to the 5S loop E region. The alignment is derived from the Rfam entry RF00001.

1. Please paste DNA or RNA sequence alignment in FASTA format:

>AB035926.1/5989-6104
CCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGG
>X02254.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>M34758.1/2-116
CCGAUG-UAGUGCAGA-AUA-CCUGUGCGAAAGUAGG
>X02259.1/3-117
CCGAUGGUAGUGUGCA-UUU-GCCAUGUGAGAGUAGG
>X00070.1/1-118
CCUAGUGUACUGCGGGGGGACCACGCGGGAACCUAGG
>X00687.1/1-119
GUAGGUGUAGUAUGGGGUGACCACAUGCGAACCCUAC
>M36316.1/2-120
CGUCGUGUACUGUGGGGGGACCACACGGGAAACGGCG
>L27169.1/1-121
AUCGUGGUACUGGAGAGCGAUCCUCUGGGAACACGAG
>X62862.1/2-123
UCUAUAGUACUAAAAUGAGAGUCUUUGGGAAUAUGGA
>D10534.1/1-121
CCUGACGUAGUGUAGGGAGACCAUACGCGAACUCAGG
>AF114035.1/6057-6173
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>X01536.1/1-119
CCAGCUGUACCUGGGGGUGACCGCCUGGGAACGCUGG
>X06836.1/1-119
CGUGGUGUACUUGCGGGAGACCGGCUGGGAAACCACG
>X52302.1/2-117
CCGAUGGUACUGCAGGGCGACCCUGUGGGAGAGUAGG
>L27166.1/1-122
AUCGUGGUACUGGAGAGCGAUCCUCAGGGAACACGAG
>M35567.1/3-116
CCGAUG-UAGUGUGGA-UUAC-CCAUGUGAAAGUAGG
>K01389.1/140-255
CCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGG
>X04305.1/1-118
CGUGGUGUACUUAGGGGUGACCGCUUGGGAAACCACG
>M18171.1/1-119
CGAGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUUG
>X02036.1/1-119
CGUGGUGUACUGGGGGGGGACCACCUGGGAACCCACG
>X02706.1/2-120
CUGAACGUAGUACGGGGGGACCACGUGCGAACCUCAG
>X71804.1/109-227
CCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCGGG
>X05533.1/1-118
CCGGGCGUACUACGGGGGGACCACGUGGGAACCCCGG
>M58416.1/2-116
CCGAUGGUAGUUGGGGGUUUCCCCCUGCGAGAGUAGG
>X06104.1/1-119
CGUGCUGUACUACCAGGGGACUGGGUGGGAACGUGCG
>Z11818.1/3-116
CCGAUGGUAGUUGGGCAU-UGCCCCUGCGAGAGUAGG
>AE000007.2/3022-3129
CCGAAUGUAGCU--UU------UC-AGUGAGAAUAGG
>M33892.1/2-110
CCGAUGGUACUGC-UU--CA--CUGCGGGAGAGUAGG
>X52048.1/2-120
CUGGACGUACUGGACAGGAAUGAUCUGGGAACCCCAG
>AJ235270.1/260875-260989
CUAAUGGUACUAUGCA-UAA-GCCAUGGGAGAGUAAG
>X01543.1/1-118
CGCGGUGUACUGUCGGGAGACCAGAUGGGAAACCGCG
>AF331021.1/183-301
CGAGAGGUACUAGGGGGUGACCUCCCGGGAAUCCUCG
>U01070.1/190-289
CCGAAA-UACUAGA-A--------AUAGGAAAAUAGG
>X58912.1/148-266
ACCAGUGUACUAUGGGGGGACCACAUGGGAAACUGGU
>X00865.1/1-119
GCGGAUGUAGUUGGCGGUGACGACCAGCGAAACCUGC
>X00930.1/3-118
UCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGA
>X14441.1/5-123
UCUGGUGUACUGGAGAGCGAUCCUCUGGGAAUCCAGU
>X01484.1/2-120
CCCAGUGUACUGAGGGGCGACCACUUGGGAAACUGGG
>X01544.1/1-118
CGACGUGUACUGUGGGGGGACCGCACGGGAAACGUCG
>X13222.1/1-121
CACGAUGUACUCUGGGGGGACCUCAGUGGAACUCGUG
>Z11825.1/3-116
CCGAUGGUAGUUGGGCAU-UGCCCCUGCGAGAGUAGG
>M34760.1/2-117
CCGAUG-UAGUGUGCAGGU-UGCCAUGUGAAAGUAGG
>X00378.1/2-120
CCAGAAGUACUGGGGGGUGACCUCCCGGGAAUCCUGG
>M59345.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>X03701.1/3-119
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>X03567.1/108-226
GCUGGUGUAGUAUGGGGUGACCACAUGCGAACCCAGC
>X01004.1/1-119
CCCGGUGUACUUGGGGGAGACCGCCUGGGAAACCGGG
>X05057.1/3-119
CCGAUGGUACUGCAC-GACAGGGUGUGGGAGAGUAGG
>Z50058.1/3-119
CCGAUGGUACUGCACUGUCAGGGUGUGGGAGAGUAGG
>Z50067.1/4-120
CUGAUGGUACUGCAC-GGUAGGGUGUGGGAGAGUAAG
>X65710.1/35-152
CGAGAGGUACUAGGGGGUGACCUCCCGGGAAUCCUCG
>M11536.1/2-116
CCGAUGGUAGUGUGCAGU--UGGCAUGUGAGAGUAGG
>M76575.1/4-118
CCCAUG-UACUCUGCUC-AA-GGCACGGAAAAGUCGG
>K03169.1/1-118
CCUAGUGUACCACGGGGGGACCACGCGGGAACCUAGG
>K02682.1/2-118
CCGAUGGUACUGCACCGGGAGGUUGUGGGAGAGUAGG
>X13006.1/1-116
CCGAUGGUAGUUGGGGGUUUCCCCCUGUGAGAGUAGG
>M55343.1/5620-5736
CCGAUGGUACUGCAGGGGGACUGUGUGGGAGAGUAGG
>AF036708.1/19036-19140
CCAAAGGUA--G--C-GCAAG--C-----AAAAUAGG
>M10438.1/2-120
CCAGAUGUACUGGGGAGGGAUCACUUGGGAACCCUGG
>X05052.1/3-119
CCGAUGGUAGUGCGCACGC-UGUCGUGCGAGAGUAGG
>AJ131593.1/3-115
CCGAUG-UAGUGCG---GAUUCCCGUGUGAAAGUAGG
>X04309.1/2-120
CCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCAGG
>X15126.1/3-120
CCGAUGGUACUGCAC-GACAGGGUGUGGGAGAGUAGG
>M11543.1/1-115
CCAAUGGUACUGCGCA-AAA-GACGUGGGAGAGUAGG
>Z11819.1/3-116
CCGAUGGUAGUUGGGCAU-UGCCCCUGYGAGAGUAGG
>M33887.1/1-111
CAGAUGGUACUGCA-U------AUGUGGGAGAGUAUG
>X55261.1/3-119
CCGAUGGUACUGCAC-GACAGGGUGUGGGAGAGUAGG
>L37449.1/4-118
CCUAUUGUACCGAGCU-UAA-GCGGCGGGAGAGUCGG
>M35166.1/2-110
CCGAUG-UAGUGCCCA-CCA----GUGCGAAAGUAGG
>X01950.1/1-117
CCGA--GUAGUUGGGGAUCUCUUCCUGCGAGGAUAGG
>X00916.1/1218-1332
UUCCUUGUACUGCUAU-----CUAGUGGGAAAAGGUG
>X05053.1/3-118
CCGAUG-UAGUGUGGGGCCUCCCCAUGUGAAAGUAGG
>M34774.1/2-116
CCAAUGGUACUUCGCUC-AA-GACGCGGGAGAGUAGG
>X05527.1/1-120
CCGGGUGUACUGAGGAGGGAUCACUCGGGAACCCCGG
>U18089.1/3485-3600
CCUAUG-UAGUUGAGGGUCUCCCUCCGCGAAAGUCGG
>X01550.1/1-119
CCCAGUGUACUUGGGGGUGACCGCCUGGGAAACUGGG
>X05519.1/1-116
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>AF170176.1/1092-1207
CCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGG
>Z50056.1/3-119
CCGAUGGUACUGCAC-GUCAGGGUGUGGGAGAGUAGG
>X00190.1/1-118
CUCGGUGUACUUGGGGGAGACUGCCUGGGAAACCGAG
>M36155.1/1-117
CCGAUGGUACUGCAGGGAGACUGUGUGGAAGAGUAGG
>D10526.1/1-121
CCACAGGUAAUACAGGGAGACCAUGUGUGAAUUGUGG
>X13037.1/1-119
CGUAGUGUACUUGGGGGUGACCGCCUGGGAAACUACG
>X75615.1/8-118
CCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGG
>M10433.1/1-119
CUGGAGGUACUAGGGGGUGACCUCCUGGGAAUCCCAG
>X02251.1/3-118
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>M58384.1/1-118
CCUAGUGUACCACGGGGGGACCACGCGGGAACUUGGG
>K03161.1/1-118
CCUAGUGUACCAUGGGGGGACCACAUGGGAACCUGGG
>D13619.1/3-119
CCGAUGGUACUGCAC-GUGAGGGUGUGGGAGAGUAGG
>K02350.1/1-119
CCAGGAGUACCUGGGGGGGACCGCCUGGGAAGCCUGG
>X06847.1/1-119
GCCAGAGUAUUGACGGGUGACCAGUCGAGAAACUGUG
>M24954.1/1-119
CCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCAGG
>X06852.1/1-118
CUCAGUGUACCACGGGGGGACCACGUGGGAACCUGGG
>X58874.1/548-664
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>AJ417699.1/1-119
CCCGGUGUACUUGGGGGAGACCGCCUGGGAAACCGGG
>X62858.1/1-121
UGUGGGGUACUGCGUU-UUU-GCUGUGGGAACCCACU
>X15329.1/3-123
UCCCGGGUACUGCCCCGAGAGGGGGCGGGAACCGGGG
>U28505.1/6807-6921
CCAAUGGUACUUCGCU-UAA-GACGCGGGAGAGUAGG
>M36314.1/2-120
CGUCGUGUACUGUGGGGGGACCACACGGGAAACGAUG
>X00866.1/1-119
GCUGAUGUAGUUGGCGGUGACGACCAGCGAAACCGGC
>X01501.1/2-116
CCAAUGGUACUGCGCA-AAA-GACGUGGGAGAGUAGG
>AB015590.1/1-119
CCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCAGG
>AJ131599.1/3-114
CCGAUG-UAGUGC-GGGU-UCCC-GUGUGAAAGUAGG
>L37450.1/2-118
CCGAUGGUACUGCCCU-UAA--GCGCCGGAAAGUAGG
>AF454951.1/1084-1198
CCAAUGGUACUUCGCUC-AA-GACGCGGGAGAGUAGG
>X13663.1/1-117
UCGAUGGUACUGCAGGGUGACUGUGUGGGAGAGUAGA
>M16176.1/4-120
CCGAUGGUACUGCACUGGGAGGGUGUGGGAGAGUAGG
>X02248.1/3-118
UCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGA
>K02688.1/1-115
CCGAUGGUAGUCGGC--UUACGUUCCGCUAGAGUAGG
>M16205.1/4-122
CUGAUGGUACUGCACUUGGUGGUUGUGGGAGAGUAAG
>AJ419791.1/210-328
CCUGUUGUACUGAGGGGGGACCACUCGGGAAUUCAGG
>U39694.1/9296-9392
CUAAAUGUA--G--UAGUAAUACUG----AGAAUAGG
>X01590.1/5-121
CCGAUGGUACUGGGCCGCAGGGUCCUGGGAGAGUAGG
>L27162.1/2-122
ACCGGGGUACUGGAGAGCGAUCCUCUGGGAACGGGGU
>X52051.1/2-120
CCGGUCGUACUGAGGAGUGAUCACUCGGGAACACCGG
>M19136.1/148-266
CUUGGCGUACUGAGGGGAGACCGCUCGGGAAACCAGG
>X06694.1/9-124
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X02731.1/3-119
GUGAAG-UAGUUGGGGGUAGCCUCCUGCAAAAAUAGC
>X52301.1/1-117
CCGAUGGUACUCCGGGGAAACCGCGUGGGAGAGUAGG
>X53853.1/5621-5735
CCAAUGGUACUGCGCUC-AA-GACGUGGGAGAGUAGG
>X02260.1/3-117
CCGAUGGUAGUGUGGAGU--UCCCAUGUGAGAGUAGG
>X67494.1/1-118
CUAGGUGUACCAAGGGGGGACCACUUGGGAACCCUAG
>Z50060.1/3-119
CCGAUGGUACUGCAC-CCGCGGGUGUGGGAGAGUAGG
>J01888.1/1-119
CGUGGUGUACUUAGGGGUGACCGCUUGGGAAACCACG
>X06848.1/1-119
GCCAGAGUAUUGCCGGGUGACCAGGCGAGAAACUGUG
>D13616.1/3-119
CCGAUGGUACUGCA-GGGGACGGUGUGGGAGAGUAGG
>X02637.1/3-120
GCUAAG-UACUUGCGGGUUGCUGGCUGGGAAAAUAGC
>K02687.1/1-115
UCGAUGGUAGUCGAC--UUACGUUCCGCUAGAGUAGA
>X57791.1/153-262
CUGAUGGUACUGCGGU------UCGCGGGAGAGUAGG
>M36188.1/5-125
UCCUUAGUACUGAAGUGCGAGCCUUCGGGAAUCUGGA
>AJ132198.1/1-116
CCCGGUGUACUUGGGGGUGACCGCCUGGGAAACCGGG
>X55267.1/3-119
CCGAUGGUACUGCAC-GAGAGAGUGUGGGAGAGUAGG
>X02713.1/1-117
CCGA--GUAGUUGGGGAUCUCUUCCUGCGAGGAUAGG
>K03160.1/1-118
CCCAGUGUACCACGGGGGGACCACGCGGGAACCUGGG
>M35169.1/2-109
CCUAUG-UA--G--GCGUCAGCGCG----AAAGUCGG
>K02345.1/1-118
CGAGGCGUAGUACGGGGUGACCACGUGCGAACCCUCG
>X06833.1/1-115
CUGUGUGUACUUGGGGGUGACCGCCUGGGAAUCACAG
>M34762.1/3-116
CCGAUG-UAGUGUGCAAUU-UGCCAUGCGAAAGUAGG
>X02258.1/3-117
CCGAUGGUAGUGUGCA-UUU-GCCAUGUGAGAGUAGG
>L12402.1/3-117
CCAAUGGUACUUCGCUC-AA-GAGGAGGCAGAGUAGG
>M27245.1/5773-5889
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>D10535.1/1-121
CGAGACGUAGUGUAGGGAGACCAUACGCGAACUCUCG
>M35571.1/1-119
GCCAGAGUAUUGACGGGUGACCAGUCGAGAAACUGUG
>M36187.1/5-126
UGUGGGGUACUGCGUU-UUU-GCUGUGGGAACCCACU
>Y00159.1/2-117
CC-AAU-UAGUGUGGGCUU-CCUCAUGCGAAAGUAGG
>X00074.1/1-118
CCUAGUGUACCACGGGGGGACCACGCGGGAACCUGGG
>K02348.1/1-119
CCGGGUGUACCUGGGGGUGACCGCCUGGGAAACCUGG
>M10817.1/1-119
CCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCGGG
>L12404.1/3-117
CUGAUGGUACUUUGCUC-AA-GGCACGGCAGAGUAAG
>AF051554.1/130-236
CCGAUG-UACUU--AA--AA-----AGGGAAAGUAGG
>X15199.1/158-276
CGAGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUCG
>M11715.1/3-118
CCGAUG-UAGUAUGGGGUCUCCCUAUGCGAAAGUAGG
>X02252.1/3-118
UCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>AJ312082.1/1-119
CCCGGUGUACUUGGGGGUGACCGCCUGGGAAACCGGG
>M35310.1/1-117
CCGAUGGUACUCCGGGGGAACCGCGCGGGAGAGUAGG
>X02627.1/4-118
CCAAUGGUACUUCGCUC-AA-GACGCGGGAGAGUAGG
>X55269.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>X73589.1/1-118
CCCAGUGUACCACGGGGGGACCACGCGGGAACCUGGG
>M11716.1/2-115
CCGAUG-UAGUGUGGA-UUA-CCCAUGCGAAAGUAGG
>D16558.1/6715-6832
CCAGGCGUACUACGGGGGGACCACGUGGGAACCCUGG
>L08503.1/3-117
CUGAUGGUACUUUGCU-UAA-GGCACGGGAGAGUAAG
>M36307.1/1-119
CUUCGUGUAGUUUGGGGGGACCACAAGCGAAACGAAG
>X68666.1/1-122
CUUGGUGUACUGAGGAGGGAUCACUCGGGAACCCAAG
>Z11822.1/1-116
CCGAUGGUAGUUGGGCAU-UGCCCCUGCGAGAGUAGG
>X00072.1/1-118
CCGAGUGUACUAAGAGGGGACUACUUGGGAACCUGGG
>K02354.1/1-118
CGCGGUGUACUUGGGGGUGACCACCUGGGAAACCGCG
>AF088897.1/10366-10481
CCGAUGGUACUGUUCU-UAA--GCAACGGAAAGUAGG
>M34003.1/489-607
CGGUGUGUACUGGGGGGCGACCACCCGGGAACCACCG
>M35569.1/4-116
CCGAUG-UAGUGCGAU-UCG---CGUGUGAAAGUAGG
>X01620.1/1-118
CCGGAUGUACUGGGGGGUGACCUCCCGGGAAUCCCGG
>X15179.1/3-118
CCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGG
>X55265.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGA
>AF114034.1/6052-6168
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>M16532.1/2-117
CCGAUG-UAGCCUCC-CCGA-GCGAGGUGAAAGUAGG
>M34770.1/1-114
CCCAUGGUACUGUGCC--AA-GACACGGGAGAGUCGG
>D00058.1/1-118
CCCGGUGUACUACGGGGGGACCACGUUGGAACCCGGG
>X05234.1/1-119
CCUGGUGUACUUGGGGGUGACCGCUUGGGAAACCAGG
>L37447.1/4-116
CCGAUGGUACUACCCU-UAA--GCGUUGGAAAGUAGG
>Z50061.1/3-119
CCGAUGGUACUGCAC-GAAGGGUUGUGGGAGAGUAGG
>M33893.1/2-111
CCGAUGGUACUGC-UU--UA--UUGCGGGAGAGUAGG
>X00691.1/1-119
GGAGGUGUAGUUGGGGGUGACCACCAGCGAACCCUUC
>X01551.1/1-119
CCUCGUGUACUUGAGCGUGAGCGUCUGGGAAACGAGG
>X15181.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X06098.1/1-107
CCGACG-UA--G--CCGCAAGGU-G----AAAAUAGG
>M34773.1/1-114
CCGAUGGUACUAUGCUC-AA-GACCUGGGAGAGUAGG
>D13617.1/2-117
CUGAUGGUACUGCC--GUGGUGGGGUGGGAGAGUAGG
>X00757.1/2-119
GC-AAC-UAGCUCCGGGUAGCCGGUCGCUAAAAUAGC
>M10437.1/2-120
CCGGAAGUACUGGGGGGUGACCUCCUGGGAAUCCCGG
>X00575.1/1-121
CCCAGUGUACCGGAGGGGGACCAUCCGGGAACCUGCC
>Z50737.1/3-119
CCGAUGGUACUGCAC-GUGAGGGUGUGGGAGAGUAGG
>X02630.1/3-115
CCGAUG-UAGUGCAAU----CCCUGUGUGAAAGUAGG
>X55263.1/3-119
CCGAUGGUACUGCC-GGAGACGGGGUGGGAGAGUAGG
>M59338.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>Z50055.1/3-119
CCGAUGGUACUGCA-GGGUACGGUGUGGGAGAGUAGG
>X56490.1/1-119
CGAGAGGUACUAGGGGGUGACCCCCUGGGAAUCCUUG
>M33894.1/2-109
CCGAUGGUACUGCGUU------A-GCGGGAGAGUAGG
>X12886.1/1-117
--CCGAGUAGUUGGGGAUCGCUCCCUGCGAGGGUAGG
>M33890.1/5-120
CUGAUGGUACUGCACCGGGAGGUUGUGGGAGAGUAAG
>D00059.1/1-118
UCCAGCGUAGUACGGCGUGAGCACGUGCGAACCUGGG
>X01557.1/3-118
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>M10202.1/3-117
CUUGAUGUACUGGGGAGGGAUCACCUGGGAACCCGAG
>X02023.1/1-116
CCGAUGGUAGUUGGACUU-UGUCCCUGUGAGAGUAGG
>X54477.1/2-120
CUUCGUGUACGGCGCAGUGAUGGCGCUGGAACCGGGG
>Z11820.1/5-112
CCGAUGGUAGUUGGGGGUCUCCCCCUGUGAGAGCAGG
>M35165.1/2-110
CCGAUG-UAGUGCCCA-CCA----GCGUGAAAGUAGG
>AJ131597.1/3-113
CCGAUG-UAGUGC-GGGU-UCCC-GUGUGAAAGUAGG
>Z50059.1/3-119
CCGAUGGUACUGCAC-GAAGGGUUGUGGGAGAGUAGG
>D00062.1/1-121
CGCGCUGUACUGAGCAGGGAUGACUCGGGAACGCGCG
>L37446.1/4-117
CCGAUGGUACUAACGC-UAA--GCGUUGGAAAGUAGG
>AF101250.1/1-119
CGAGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUCG
>X02629.1/3-115
CCGAUG-UAGUGCG---GAUUCCCGUGUGAAAGUAGG
>M35573.1/1-119
CCCAGUGUAGUGCGGGGUGACCACGUGCGAAACUGUG
>M18170.1/1-119
CGAGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUUG
>X15180.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X00993.1/1-119
CCUAGUGUACUUGGGGGUGACCGCCUGGGAAACUAGG
>M16172.1/3-119
CCGAUGGUACUGCAC-GCCAGGGUGUGGGAGAGUAGG
>X62863.1/2-121
UGCUUAGUACUGAGAC-AGAGUCCUCGGGAAUCUGCG
>M16171.1/3-119
CCGAUGGUACUGCAGGGGGACCUUGUGGGAGAGUAGG
>M28984.1/1-119
CGGUGUGUACUGGGGGGCGACCACCCGGGAACCACCG
>M16173.1/3-119
CCGAUGGUACUGCACCGGGAGGGUGUGGGAGAGUAGG
>X61066.1/168-278
CCGACG-UAGUUAU-A--CA--AUUAGCGAAAAUAGG
>AE000559.1/152-269
CUGAUA-UACUGCUUU-UCA-AGAGUGGGAAUGUAGG
>M35578.1/1-118
CCUAGUGUACCACGGGGGGACCACGCGGGAACCUGGG
>D00076.1/1-119
CCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCAGG
>M35576.1/1-118
CUUAGUGUACCAUAGGGGGACCAUAUGGGAACCUGAG
>X02631.1/2-115
CUGAUGGUAGUGNGGU--UA-CCCAUGUGAGAGUAAG
>X16194.1/2-114
CCGAUG-UAGUGC-GGGU-UCCC-GUGUGAAAGUAGG
>D10532.1/1-120
CCUUACGUAUUGUAGGGAGACCAUACGAGAAAGAAGG
>X06837.1/1-119
CCAGGUGUACUUGGGGGUGACCGCCUGGGAAACCUGG
>X02255.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X05516.1/3-119
CCGAUGGUACUGCC-GAAGACGGGGUGGGAGAGUAGG
>Z50066.1/3-119
CCGAUGGUACUGCAC-GCCGGGGUGUGGGAGAGUAGG
>X05520.1/1-114
CCAAUGGUACUGCGCU-GAA-GACGUGGGAGAGUAGG
>AL445066.1/280290-280410
AUUGCGGUACUGUACCGCGAGGGUACGGGAACGCAAU
>X02239.1/3-118
UCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGA
>S73542.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>S39188.1/3-117
CCAAUGGUACUAUGCUC-AA-GACCUGGGAGAGUAGG
>L24488.1/3-117
CUGAUGGUACUUCGCUC-AA-GGCACGGGAGAGUAAG
>M76574.1/4-118
CCCAUG-UACUCUGCUC-AA-GGCACGGAAAAGUCGG
>X00997.1/1-119
CACGGUGUACUUGGGGGUGACCGCCUGGGAAACCGUG
>X02242.1/7-110
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>AJ131601.1/3-115
CCGAUG-UAGUGCG---GAUUCCCGUGUGAAAGUAGG
>M34911.1/4-118
UACCCUGUACUGCCUU------UGGUGGGAAAGGGUG
>Z11816.1/1-116
CCGAUGGUAGUUGGGCAU-UGCCCCUGCGAGAGUAGG
>X00931.1/3-117
CCGAUGGUAGUGUGCA-UUU-GCCAUGCGAGAGUAGG
>X12624.1/61-178
CUUGGUGUACCUGGGGGAGACCGCCUGGGAAACCAGG
>X01000.1/1-121
UUGGGUGUAGUCUGGAGGGAUCACAGGCGAACCCCAA
>X83208.1/1-119
CGCGGUGUACCUGGGGGUGACCGCUUGGGAAACCGCG
>AJ131590.1/3-114
CCGAUG-UAGUGGAC--GGAC-GUCUGUGAAAGUAGG
>X13035.1/1-119
CGCGGUGUACUUGGGGGUGACCGCCUGGGAAACCGCG
>M26976.1/105-223
UGGAGGGUACUGCAC-GUUAG-UUGCGGGAACCUCCA
>X15245.1/36-152
CCGA--GUAGUUGGGGGAAACUGCCUGCGAGGAUAGG
>X13662.1/1-116
CCGAUGGUAGUUGGGGUUUUCCCCCUGCGAGAGUAGG
>AJ131585.1/3-115
CCGAUG-UAGUGC-GGGU-UCCC-GUGUGAAAGUAGG
>M25201.1/1-119
CGUGGUGUACUUGGGGGUGACCGCCUGGGAAACCACG
>Z50074.1/3-119
CCGAUGGUACUGCAGCGUGAGCGUGUGGGAGAGUAGG
>M33886.1/1-116
CCGAUGGUAGUGUGACUU-UGUCCCUGUGAGAGUAGG
>M11544.1/4-118
CCGAUGGUACUAUGCU-UAA-GACCUGGGAGAGUAGG
>X02253.1/3-118
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>M76580.1/4-118
CCCAUG-UACUCUGCUC-AA-GGCACGGAAAAGUCGG
>D90253.1/251-366
--CCGAGUACUGCAAGUUCGCUCUGUGGGAGGCAGGA
>Z50057.1/2-118
CCGAUGGUACUGCAC-GCCAGGGUGUGGGAGAGUAGG
>M35167.1/2-111
CCGAUG-UAGUGCCCA-CCA----GCGUGAAAGUAGG
>X12622.1/1-118
CCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCUGG
>K02362.1/1-121
UUGGGUGUAAUCUGGAAAGAUCACAGGCGAACCCCAA
>AJ131602.1/3-115
CCGAUG-UAGUGC-GGGU-UCCC-GUGUGAAAGUAGG
>X02236.1/3-119
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>X52052.1/4-118
CCAGAAGUACUGGGGGGUGACCUCCCGGGAAUCCUGG
>X00501.1/7-121
CCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGG
>M36152.1/2-117
CCGAUGGUACUUGGGGGAAGCUGCCUGGGAGAGUAGG
>X00068.1/1-119
CCGAGUGUAGUGCGGGGGGACCACGCGCGAAACUCUG
>U67537.1/493-607
UGCCCCGUACUGCCUC------UGGCGGGAAGGGGCG
>X00067.1/1-119
CCGAGUGUAGUGCGGGGGGACCACGCGCGAAACUCUG
>X06995.1/1-119
CUAGAGGUACUGGGGGGUGACCUCUCGGGAAUCCUAG
>M59335.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>M28193.1/1-119
CGUCGUGUACUAUAGGGUGACCAUAUGGGAAACGACG
>M35395.1/1-119
CCAGGUGUACUUGGGGGUGACCGCCUGGGAAACCUGG
>AJ131588.1/3-114
CCGAUG-UAGUGGAC--GGAC-GUCUGUGAAAGUAGG
>X02237.1/3-118
UCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGA
>X52303.1/2-118
CCGAUGGUACUGCCGGGCAACCUGGUGGGAGAGUAGG
>M35568.1/2-115
CCGAUG-UAGUGCGGU-UCUC-CCGUGUGAAAGUAGG
>K02349.1/1-119
CCAGGAGUACUUGGGGGGGACCGCCUGGGAAUCCUGG
>X75601.1/91-203
CCGAUG-UACUGCCU-----CCGGGUGGAAAAGUAGG
>M16074.1/307-425
CGCGGUGUACUUGGGGGUGACCGCCUGGGAACCCGCG
>X00867.1/1-119
GCUGAUGUAGUUGGCGGUGACGACCAGCGAAACCGGC
>X00689.1/1-119
GCUGGUGUAGUAUGGGGUGACCACAUGCGAACCCAGC
>X04585.1/3-117
CCGAUGGUACUGCGCUC-AA-GACGUGGGAGAGUAGG
>M11541.1/4-119
CCUAUG-UAGUUGAGGGCCUCCCUCCGCGAAAGUCGG
>X06843.1/1-119
CGAGAGGUACUAGGGGGUGACCCCCUGGGAAUCCUCG
>AF051555.1/130-236
CCGAUG-UACUU--AA--AA-----AGGGAAAGUAGG
>M35394.1/1-119
CGUGGUGUACUUGGGGGUGACCGCCUGGGAAACCACG
>X06849.1/1-119
GCCAGAGUAUUGACGGGUGACCAGUCGAGAAACUGUG
>V01120.1/2-120
UAGCGUGUACUAUGGGGGGACCACAUGGGAAACGCUA
>X00475.1/121-239
CUGGGUGUACUAAGGGGGGACCGCUUGGGAAUCCCAG
>AE004502.1/3179-3294
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X16193.1/4-119
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>M60936.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>X03407.1/5927-6048
UCCGGUGUACUGGAGCGCGAGCCUCUGGGAAUCCGGU
>X02025.1/1-116
CCGAUGGUAGUUAGGGCUGUCC-CCUGUGAGAGUAGG
>M35570.1/5-120
UCGAUA-UACUGCCCC--UACGGGGUGGGACGGUAGA
>AF116561.1/5902-6018
CCGAUGGUACUGCA-GGUGACGGUGUGGGAGAGUAGG
>X55264.1/4-122
CUGAUGGUACUGCACUUGGUGGUUGUGGGAGAGUAAG
>X06839.1/3-124
CGUGUCGUACUCAGGGGGGACCACUGGGGAACGCNNN
>M34776.1/2-116
CCGAUGGUACUAUGCU-UAA-GACCUGGGAGAGUAGG
>M35565.1/3-118
CCGAUG-UAGUGUGAUACU-CUCCAUGUGAAAGUAGG
>X06996.1/1-118
CUAGAGGUACUGGGGGGUGACCUCCCGGGAAUCCUAG
>M11535.1/2-117
CCAAUGGUAGUGUGGGGUUUCCCCAUGCGAGAGUAGG
>M16169.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>L27163.1/1-119
UCCGGGGUACUGGAGCGCGACCCUCUGGGAAACCGGG
>X16191.1/4-119
CCGAUGGUACUAGUCUUCAA--GCACUGGAAAGUAGG
>D10530.1/1-120
CCUUACGUACUAUAGGGUGACCAUAUGGGAAUGAAGG
>M36311.1/2-120
AUCAGUGUACUAUGGGGGGACCACAUGGGAAACUGGU
>AF008220.1/5185-5300
CCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGG
>X12884.1/1-117
CCGAAGGUAAUUGGGGCUGUCCCCCUGUGAGAGUAGG
>M34769.1/10-105
CCGAUGGUACUUCGCU-UAA-GACGCGGGAGAGUAGG
>K01537.1/51-169
CCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCAGG
>X01570.1/1-119
CCCAGUGUACCACGGGGGGACCACGCGGGAACCUGGG
>M16530.1/8-123
GGACGGGUACUGGGCCGCGAGGCCCCGGGAACCGCCG
>X55260.1/3-119
CCGAUGGUACUGCAC-GAGAGGCUGUGGGAGAGUAGG
>X02044.1/4-118
CCAAUGGUACUGCGCU-UAA-GGCGUGGGAGAGUAGG
>X13007.1/1-116
CUGAUGGUAGUUGGGGGUUUCCCCCUGUGAGAGUAAG
>X06576.1/4-117
CCAAUGGUACUUCGCUC-AA-GGCGCGGGAGAGUAGG
>L27170.1/1-120
UCCGGCGUACUGGAGCGCGAGCCUCUGGGAAUCCGGU
>Z50075.1/3-119
CCGAUGGUACUGCAC-GUAGGGGUGUGGGAGAGUAGG
>M34761.1/2-116
CCGAUG-UAGUGUGCAGUU-UGCCAUGUGAAAGUAGG
>X15246.1/11-127
CCGA--GUAGUUGGGGGAAACUGCCUGCGAGGAUAGG
>D00063.1/1-121
CACGCUGUACUCCGGGGGGACCACGGUGGAACGCGUG
>M35563.1/5-120
CCGAUGGUAGUGUGGGGCCUCCCCAUGUGAGAGUAGG
>L27167.1/1-122
ACCGUGGUACUGGAGAGCGAUCCUCUGGGAACACGAG
>M11546.1/4-118
CCCAUGGUACUGUGCUC-AA-GGCACGGGAGAGUAGG
>K02343.1/1-119
CAUGGUGUACUAAGGGGGGACCGCUUGGGAACCCAUG
>M36306.1/1-119
CGUGGUGUACUGCGGGGGGACCACGCGGGAAACCACG
>AF034619.1/5584-5700
UCCAGGGUACUGGAGCGCGAGCCUCUGGGAAUCCGGU
>M29167.1/1-109
GUGAAG-UAUUAC--U------AUGUGAGAAAAUAGC
>X59479.1/518-634
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>Z50073.1/3-119
CCGAUGGUACUGCAC-GCUAGGGUGUGGGAGAGUAGG
>K03155.1/22-137
CCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGG
>M36309.1/1-120
CUCGGUGUACUAUGGGGAGACCACAUGGGAAACCGGG
>X00020.1/1-119
CGUGGUGUACGUGGGGGUGACCGCCUCGGAAACCACG
>M36186.1/5-125
UGUGGGGUACUGCGUU-UUU-GCUGUGGGAACCCACU
>D13620.1/3-119
CCGAUGGUACUGCACGGGGACGGUGUGGGAGAGUAGG
>X06103.1/1-119
CGCGUCGUACUGCCAGGGGACUAGGUGGGAACACGCG
>M59346.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>V00646.1/1-107
GUGAAG-UAUUAC--U--GA--U-GUGAGAAAAUAGC
>X02027.1/1-117
CCGAUUGUAGUGAGGGGUUGCCCCUUGUGAGAGUAGG
>M11545.1/4-118
CCCAUGGUACUGUGCUC-AA-GGCACGGGAGAGUAGG
>M10364.1/2-118
GCGACG-UAGUUGGGGGUAGCCUCCUGUCAAAAUAGC
>X55253.1/3-119
CCGAUGGUACUGCAGGGGGACCGUGUGGGAGAGUAGG
>M16174.1/3-119
CCGAUGGUACUGCAC-GAGAGGCUGUGGGAGAGUAGG
>X57691.1/1-116
UGGGGUGUACUUAGGGGUGACCGCUUGGGAAACCUCA
>X06578.1/1-116
CCGACGGUAGUUCGGGCUGCCCUCCCGUGAGAGUAGG
>AF072692.1/240-358
CGAGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUUG
>M21086.1/8-123
GGGGGACUG-UGGGCCGCGAGGCCCCGCAGCCCCCCA
>X02250.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X06854.1/5-111
CCUAGUGUACCACGGGGGGACCACGCGGGAACCUAGG
>D10528.1/1-121
UCUGAUGUAGUGUAGGGAGACCAUACGCGAAUUCAGA
>M59340.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>X05041.1/3-118
CCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGG
>M16177.1/4-120
CCGAUGGUACUGCACUGGGAGGGUGUGGGAGAGUAGG
>M36312.1/2-120
CAGGGUGUACUAUGGGGGGACCACAUGGGAAACCCUG
>Z50062.1/3-119
CCGAUGGUACUGCAC-GAAGGAGUGUGGGAGAGUAGG
>D10525.1/1-120
CCACAUGUAUUACGGGGAGACCACGUGAGAAGGGUGG
>X62860.1/3-123
UCCGUAGUACUAAAGCGCGAGCCUUUGGGAAUGCGGA
>M25202.1/1-119
CCUUCCGUACUCUGUGGAGACAACAGGGGAAAUAGGG
>J01009.1/607-725
CCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCAGG
>X00998.1/1-119
CCCGGUGUACUUGGGGGUGACCGCCUGGGAAACCGGG
>M16533.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>M30199.1/68-167
CCGAAG-UACUAGA-A--------AUAGGAAAAUAGG
>X55254.1/3-119
CCGAUGGUACUGCAC-GACAGGGUGUGGGAGAGUAGG
>M34772.1/1-114
CCGAUGGUACUAUGCUC-AA-GACCUGGGAGAGUAGG
>X55268.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>X52047.1/2-120
CUGGAUGUACUGGACAGGAAUGAUCUGGGAACCCCAG
>K01050.1/1-121
CCUGAUGUAGUGUAGGGUGACCAUACGCGAACUCAGG
>X01518.1/1-119
CGUAGUGUACUUGGGGGUGACCGCUUGGGAAACUACG
>X05541.1/1-121
CACGAUGUACUCUGGGGGGACCACAGUGGAACUCGUG
>L37451.1/4-118
CCGAUGGUAUCAACCU-CAA--GCGUUGGAAAGUAGG
>X02030.1/3-120
CCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGG
>X06688.1/3-118
CCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGG
>X03905.1/4-117
CCGAUGGUACUAUGCU-UAA-GGCAUGGAAGAGUAGG
>X01617.1/1-119
CCGGAAGUACUGGGGGGUGACCUCCCGGGAAUCCCGG
>X06835.1/1-119
CCUAGUGUACUUAGGGGUGACCGCUUGGGAACCUAGG
>M36310.1/2-120
CUUCGUGUACUAUGGAGAGAUCACAUGGGAAACGAAG
>X13040.1/1-118
CGAGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUCG
>M19950.1/1-120
CCUGACGUAGUGUAGGGCGACCAUACGCGAACUCAGG
>M10436.1/2-120
CCGGAAGUACUGGGGGGUGACCUCCCGGGAAUCCCGG
>X16225.1/825-943
UCCAGUGUACUUGGCGGAGACGGCCUGGGAACCUGGA
>X03902.1/1-114
CCCAUGGUACUGUGCUC-AA-GACACGGGAGAGUCGG
>X02235.1/3-118
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>M10435.1/2-120
CCUGAAGUACUGGGGGGUGACCUCCCGGGAAUCCGGG
>AJ131595.1/3-115
CCGAUG-UAGUGC-GGGU-UCCC-GUGUGAAAGUAGG
>M36315.1/3-121
CGUCGUGUACUGUGGGGGGACCACACGGGAAACGGCG
>X01535.1/1-119
CCUGCCGUACUUGGGGGUGACCGCCUGGGAAAGCAGG
>X05532.1/1-118
CCAGGCGUACUACGGGGGGACCACGUGGGGGCCCUGG
>X02128.1/24-139
UCUGGUGUACUGGAGAGCGAUCCUCUGGGAAUCCAGU
>X02039.1/3-118
CCGAUG-UGGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>M76388.1/6142-6258
CCGAUGGUACUUCAGGGGGACCCUGUGGGAGAGUAGG
>M10850.1/361-479
CCUGGUGUACCUGGGGGAGACCGCCUGGGAAACCAGG
>M35168.1/2-110
CCGAUGGUACUGC-AA--------GUGUGAAAGUAGG
>M76573.1/4-118
CCUAUG-UACUGCGCU-UAA-GCCGUGGGAAAGUCGG
>L27343.1/3-116
ACCAGCGUACUAGAGGGAGACCCUCUGGGAGGCUGGU
>M10434.1/1-119
UUGGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUAA
>M35170.1/2-108
CCGAUGGUAGUGCGUC--CA----GCGCGAGAGUAGG
>D13615.1/3-119
CCGAUGGUACUGCAGGGAGACUGUGUGGGAGAGUAGG
>X61068.1/253-364
CCGACG-UAGUUAU-A--CA--AUUAGCGAAAAUAGG
>AF114033.1/6078-6194
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>Z11821.1/3-116
CCGAUGGUAGUUGGGCAU-UGCCCCUGCGAGAGUAGG
>D13622.1/3-119
CCGAUGGUACUGCACGGGGACGGUGUGGGAGAGUAGG
>D13618.1/3-119
CCGAUGGUACUGCAC-GGGAGGGUGUGGGAGAGUAGG
>Z50077.1/4-121
CCGAUGGUACUGCAC-GAUAGGGUGUGGGAGAGUAGG
>M76576.1/4-118
CCCAUG-UACUCUGCUC-AA-GGCACGGAAAAGUCGG
>M34759.1/7-109
CCGAUG-UAGUGCGCAGGU-UGUCGUGCGAAAGUAGG
>X01534.1/1-119
CCUGCCGUACUUGGGGGUGACCGCCUGGGAAAGCAGG
>M36313.1/2-120
CCUAGUGUACUACGGGGGGACCACGUGGGAAACUAGG
>X06575.1/4-117
CCAAUGGUACCAUGCU-UAA-GCCCUGGGAGAGUAGG
>D90255.1/422-538
CCGAUGGUACUAUUGGUUCGCUCAAUGGGAGAGUAGG
>X00992.1/1-119
CCCAGUGUACUUGGGGGAGACCUCCUGGGAAACUGGG
>M36159.1/2-116
CCGAUGGUAGUUGGGGGUUUCCCCCUGCGAGAGUAGG
>X62859.1/3-124
UUUGUUGUACUGUGACGAGAGUCUAUGGGAACUCAUA
>M16170.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>AJ131587.1/3-115
CCGAUG-UAGUGCG---GAUUCCCGUGUGAAAGUAGG
>M34775.1/1-115
CCGAUGGUACUAUGCUC-AA-GACCUGGGAGAGUAGG
>X02243.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X05535.1/1-118
CCAGGCGUACUACGGGGGGACCACGUGGGAACCCUGG
>X02729.1/3021-3135
UUCUUUGUACUGCUAU-----CUAGUGGGAAAAAGUG
>X07692.1/700-821
UCCCGGGUACUGCCCCGGGAGGGGGCGGGAACCGGGG
>J01893.1/5-114
CUGGGUGUACUAAGGGGGGACCGCUUGGGAAUCCCAG
>M36308.1/1-119
CUAGGUGUACUAUGGGGGGACCACAUGGGAAACUUAG
>X52299.1/5-122
CCUAUG-UACUUGGCCGCAGGGUCCUGGGAAAGUCGG
>M35566.1/3-117
CCGAUG-UAGUGUGCA-UAU-GCCAUGUGAAAGUAGG
>K02344.1/1-118
CUCAGUGUACCACGGGGGGACCACGCGGGAACCUGGG
>M76579.1/4-118
CCUAUG-UACUGCACUC-AA-GGUGCGGAAAAGUCGG
>M11540.1/3-116
CC-AAU-UAGUAGGCACCUCG--CCUGUGAAAGUAGG
>X52050.1/1-119
CUCGAAGUACUGGCGGGUGACCCGCCGGGAAUCCGAG
>X62864.1/3-123
UCCUUGGUACUGAAGUGCGAGC-UUCGGGAAUCUGGA
>M28975.1/65-183
CUUAGUGUACUGAGCAGUGAUGACUCGGGAACCUGAG
>D13621.1/3-119
CCGAUGGUACUGCAC-GUGAGGGUGUGGGAGAGUAGG
>D00061.1/1-120
CAGGGCGUACUGACUAGAGAUGAGUCCGGAACCCCUG
>S43413.1/98-213
CCUGAUGUAGUUGGGGGUUGCCCCCUGUUAGAUACGG
>M33891.1/4-123
CCGGAGGUACUGCGGGGCAACCGCGUGGGAGGCGAGG
>V00476.1/1-119
AUCAGUGUACUUGGGGGUGACCGCCUGGGAAACUGGU
>M11537.1/2-117
CCGAUGAUAGUGUGGGGUCUCCCCAUGUGAAAGUAGG
>X02031.1/1-118
CCCAGUGUACUGAGGGGCGACCACUUGGGAAACUGGG
>U09230.1/4482-4597
CCAAUGGUAGUACGGGGUCUCCCCGUGUGAGAGUAGG
>X02026.1/1-117
CCGA--GUAGUUGGGGAUCGCCCCCUGCGAGGAUAGG
>M58383.1/4-115
CCUAGUGUACCACGGGGGGACCACGCGGGAACCUAGG
>X55252.1/1-115
CCGAUGGUACUUGGGA-UGA-CCCCUGGGAGAGUAGG
>X01002.1/1-119
CCUAGUGUACUUGGGGGUGACCGCCUGGGAAACUAGG
>M32450.1/1-119
CCCGACGUACUAGGGGGGGACCACCUGGGAAAUCGGG
>M34763.1/3-117
CCGAUG-UAGUGUGCCGUU-UGCCAUGCGAAAGUAGG
>M76572.1/4-118
CCCAUG-UACUGUGCU-UAA-GGCACGGGAAAGUCGG
>M33889.1/1-117
CCGAUGGUACUUGCCCGCAGGGAGCCGGGAGAGUAGG
>K03168.1/1-118
CUCAGUGUACCACGGGGGGACCACGCGGGAACCUGGG
>M35164.1/2-109
CCGAUG-UAGUACCCA-------AGUGUGAAAGUAGG
>M34910.1/5-126
UCUAUAGUACUAAAAUGAGAGUCUUUGGGAAUAUGGA
>AF114036.1/6058-6174
CCCAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>X01003.1/1-119
CUUGGUGUACUUGGGGGAGACCGCCUGGGAAACCAGG
>X02246.1/3-118
UCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGA
>J01872.1/1-119
CGAGGUGUACUAAGGGGGGACCGCUUGGGAAUCCUCG
>D10527.1/1-120
CCUGACGUAGUGUAGGGAGACCAUACGCGAACUCAGG
>M34771.1/2-116
CCGAUGGUACUGUGCUC-AA-GACACGGGAGAGUCGG
>M59339.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>M36156.1/2-116
CCGAUGGUAGUUGGGGGUCUCCCCCUGCGAGAGUAGG
>AJ251080.1/1-117
CCGAUGGUAGUUGGGCCAGCGCCCCUGCAAGAGUAGG
>M35574.1/1-119
CCCAGUGUAGUGCGGGGGGACCAUGCGCGAAAUUGUG
>AF272626.1/2982-3085
CCGAAA-UA--G--C-GCAAG--U-----AAAAUAGG
>X00932.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X00864.1/1-119
GCCGAUGUAGUUGGCGGUGACGACCAGCGAAACCGGC
>X52297.1/1-116
CCGAUGGUACUCCGGGGAAACCGCGCGGGAGAGUAGG
>M35572.1/1-119
CCGAGUGUAGUGCGGGGGGACCACGCGCGAAACUCUG
>Z49275.1/645-762
CCCAGUGUACCACGGGGGGACCACGCGGGAACCUGGG
>M16531.1/2-121
CCGAUG-UACUGUGGGGCGAACGCACGGGAAAGUAGG
>AJ131586.1/3-115
CCGAUG-UAGUGGAC--GGAC-GUCUGUGAAAGUAGG
>X00996.1/1-119
CCUGGUGUACUUGGGGGUGACCGCCUGGGAAACCAGG
>X01619.1/1-119
CCGGAAGUACUGGGGGGUGACCUCCCGGGAAUCCCGG
>X00999.1/1-121
CUGGGCGUACUGAGGAGGGAUCGGUCUGGAACCCCAG
>X03904.1/2-116
CCAAUGGUACUGCGCUC-AA-GACGUGGGAGAGUAGG
>X73890.1/1-118
CCUAGUGUACCACGGGGGGACCACGCGGGAACCUGGG
>X00574.1/1-118
CCUAGUGUACCACGGGGGGACCACGCGGGAACCUAGG
>L08897.1/5770-5874
CCAAAGGUA--G--C-GCAAG--C-----AAAAUAGG
>X05233.1/1-119
CCAGGUGUACUUGGGGGUGACCGCCUGGGAAACCUGG
>X00022.1/1-119
CCCGGUGUACUUGGGGGUGACCGCCUGGGAAACCGGG
>L12403.1/3-117
CUGAUGGUACUUUGCUC-AA-GGCACGGCAGAGUAAG
>X55697.1/1-119
CGAGAGGUACUAGGGGGUGACCCCCUGGGAAUCCUCG
>AJ131598.1/3-114
CCGAUG-UAGUGA-GGGU-UCCC-GUGUGAAAGUAGG
>X00069.1/1-118
CCUAGUGUACUGCGGGGGGACCACGCGGGAACCUGGG
>X02013.1/1-116
CCGAUGGUAGUUGGGGGCUUCCCCCUGUGAGAGUAGG
>Z35330.1/6121-6235
CCAAUGGUACUAUGCU-UAA-GCCCUGGGAGAGUAGG
>X05524.1/5-117
CCGAUG-UAGUGGAC--GGAC-GUCUGUGAAAGUAGG
>X03911.1/1-119
CCCGGUGUACUUGGGGGUGACCGCCUGGGAAACCGGG
>V01420.1/2-120
CAGGAUGUACUGGGGAGUGAUCUCCUGGGAACCCCUG
>X01618.1/1-119
CCGGAAGUACUGGGGGGUGACCUCCCGGGAAUCCCGG
>V00647.1/1-119
CCUGGUGUACUUGGGGGAGACUGCCUGGGAAACCAGG
>X06834.1/1-119
CCUGGUGUACUUGGGGGUGACCGCCUGGGAAACCAGG
>M36154.1/1-117
CCGAUGGUACUGCAGGGAGACUGUGUGGAAGAGUAGG
>X52298.1/2-113
CCGAUGGUACUGCGUA-ASA---CGUGGGAGAGUAGG
>X03903.1/4-117
CCAAUGGUACUCCGCUC-AA-GACGCGGGAGAGUAGG
>X16688.1/41-159
GCUGGUGUAGUUGGGGGUGACCACCAGCGAACCCAGC
>X05525.1/1-116
CCGAUGGU-GAGUGGGGCUUCCCCCUGUGAGAGUAGG
>AJ131589.1/3-115
CCGAUG-UAGUGGAC--GGAC-GUCUGUGAAAGUAGG
>X08003.1/3-119
CCGAUGGUACUGCACCGGGAGGGUGUGGGAGAGUAGG
>AF237335.1/140-258
CGAGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUCG
>Z11824.1/3-116
CCGAUGGUAGUUGGGCAU-UGCCCCUGCGAGAGUAGG
>X79704.1/3397-3511
CCGAUG-UAGUGUGGU--CU-CCCAUGCGAAAGUAGG
>X06840.1/1-119
CGAGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUCG
>U67518.1/78-192
UGCCCCGUACUGCCUC------UGGCGGGAAGGGGCG
>X00073.1/1-117
CCCGGUGUACCACGGGGGGACCACGCGGGAACCUGGG
>X01588.1/5-119
AGUGGGC-G-UGGACCGUGAGGAUCCGCAGCCCACUA
>L27236.1/1-122
AUCGUGGUACUGGAGAGCGAUCCUCUGGGAACGCGGU
>AJ131591.1/3-116
CC-AAU-UAGUGCGAU-UGC--CCGUGUGAAAGUAGG
>M58385.1/5-116
AUUGGGGUACUAUCGGGAGACCAGAUGGGAACCGGGU
>X00377.1/2-120
CCAGAAGUACUGGGGGGUGACCUCCCGGGAAUCCUGG
>M76577.1/4-118
CCUAUG-UACCGUACU-UAA-GGUGCGGAAAAGUCGG
>Z50065.1/3-120
CCGAUGGUACUGCAC-GAAGGGGUGUGGGAGAGUAGG
>X02241.1/3-119
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>M76571.1/4-117
CCCAUG-UACUCUGCUC-AA-GGCACGGAAAAGUCGG
>X16192.1/3-117
CUGAUGGUACUUCGCUC-AA-GACGCGGGAGAGUAGG
>M10358.1/2-120
CUCGACGUACUGGGGAGGGAUUACCUGGGAACCCGAG
>X06099.1/1-107
GUGA--AUAUUAC--U------AUGUGAGAAA-UAGC
>X13034.1/1-119
UCCGGUGUACUUGGGGGAGACCGCCUGGGAAACCGGG
>M32519.1/4-118
CCGAUG-UACUGCGG--GUAGCUCGUGGGAAAGUAGG
>D10529.1/1-121
CGAGACGUAGUGUAGGGAGACCAUACGCGAACUCUCG
>M36157.1/2-116
CCGAUGGUAGUUGGGGGUCUCCCCCUGCGAGAGUAGG
>X02238.1/3-118
UCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGA
>X06851.1/1-118
CCUAGUGUACCACGGGGGGACCACGCGGGAACCUAGG
>X05526.1/2-115
CCGAUG-UACUGCCUC----CGGGGUGGAAAAGUAGG
>X02022.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X05059.1/1-119
CGAGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUCG
>X02249.1/3-117
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>M58387.1/5-112
GCAGAUGUACCACGGGGUGACCACCUGGGAACCCUGC
>X06844.1/1-119
CGAGAGGUACUAGGGGGUGACCUCCUGGGAAUCCUCG
>Z50078.1/3-119
CCGAUGGUACUGCAC-GUGAGGGUGUGGGAGAGUAGG
>X02707.1/2-120
CUGAAUGUAGUACGGGGGGACCACGUGCGAACCUCAG
>L27168.1/1-120
UUCGGUGUACUGGAGGGCGACCCUCUGGGAAUCUGAU
>AJ131583.1/3-115
CCGAUG-UAGUGC-GGGU-UCC-CGUGUGAAAGUAGG
>V01347.1/3-119
CCGAUGGUACUGCAGGGGGACCCUGUGGGAGAGUAGG
>M10816.1/1-117
CCGAUGGUAGUUGGGCCAGCGCCCCUGCAAGAGUAGG
>X01555.1/3-118
CCGAUGGUAGUGUGGGGUUUCCCCAUGUAAGAGUAGG
>M34765.1/1-114
CC-AAU-UAGUGUACU-UC---GUAUGCGAAAGUAGG
>J01851.1/1-119
CGAGGUGUACUUGGGGGGGACCGCCAGGGAACCCUCG
>AJ131592.1/3-116
CCGAUG-UAGUGCGAU-UGC--CCGUGUGAAAGUAGG
>Z50054.1/4-120
CCGAUGGUACUGUAC-GAUAGGGUGUGGGAGAGUAGG
>X52300.1/5-122
CCUAUG-UACUUGGCCGCAGGGUCCUGGAAAAGUCGG
>AF001265.1/6033-6149
CCGAUGGUACUGCAC-GACGGGGUGUGGGAGAGUAGG
>M58368.1/1-118
CUCAGUGUACCAUGGGGGGACCAUGCGGGAACCUGGG
>AJ243001.2/1-116
UCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCAGA
>X62861.1/3-124
UGUAUAGUACUAAAGCGAGAGCCUUUGGGAAUAUACU
>X16634.1/937-1057
CAAUACGUAGUGUAGGGAGACCAUACGCGAACUAUUG
>X02264.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X05870.1/304-418
GGUGGGC-G-UGGACCGUGAGGAUCCGCAGCCCACUA
>K02683.1/2-118
CUGAUGGUACUGCAUCGGUAGGGUGUGGGAGAGUAAG
>X05517.1/3-118
CCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGG
>X00081.1/2-117
--GCGGGUACUUGGGGGUUGCCCCCUGGGAGUAUGCG
>X62865.1/3-123
UCCUUAGUACUGAAGUGCGAGCCUUCGGGAAUCUGGA
>X72588.1/6990-7093
UCCAGCGUACUGGAGUGCGAACCUCUGGGAAACUG--
>X02024.1/3-117
CCGAUGGUAGUUGGGUGUUAGCCCCUGCAAGAGUAGG
>X55259.1/3-117
CCAAUG-UACUGCCC----ACCGGGUGGAAAAGUAGG
>X05081.1/5-114
CC-AAU-UAGUGUGGGCUU-CCUCAUGCGAAAGUAGG
>V00648.1/1-119
CCUGGUGUACUUGGGGGAGACUGCCUGGGAAACCAGG
>X06577.1/4-117
CCGAUGGUACUGCGCU-UAA-GGCGCGGAAGAGUAGG
>X02247.1/3-118
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>X55251.1/3-116
CCGAUG-UACUACCU-----CCGGGUGGAAAAGUAGG
>Z50076.1/4-120
CCGAUGGUACUGCACCGGUGGGGUGUGGGAGAGUAGG
>X05534.1/1-118
CCAGGCGUACUACGGGGGGACCACGUGGGAACCCUGG
>X00994.1/1-119
CCAGGUGUACUUGGGGGUGACCGCCUGGGAAACCUGG
>X55255.1/4-120
CUGAUGGUACUGCACUGGGAGGGUGUGGGAGAGUAGG
>X72495.1/5075-5190
AUUGGUGUACUGGAGGGAGACCCUCUGGGAGGCCGAU
>U26684.1/296-411
CCGAUGGUAGUGUGG-GUCUCCUCAUGUGAGAGUAGG
>Z50736.1/3-119
CCGAUGGUACUGCAC-GUGAGGGUGUGGGAGAGUAGG
>M33888.1/3-119
CCGAUGGUACUGCAC-GUGAGGGUGUGGGAGAGUAGG
>M11538.1/4-116
CCGAUG-UAGUGCGAU-UCG---CGUGUGAAAGUAGG
>X00692.1/1-119
GUGAGUGUAGUUGGGGGUGACCACCAGCGAACCUCAC
>M27961.1/79-196
CCUGGUGUACUUGGCGGAGACGGCUUGGGAACCCAGG
>J01012.1/1-119
CCUGGUGUACCUGGGGGAGACCGCCUGGGAAACCGGG
>X62857.1/1-121
UGUGGGGUACUGCGUU-UUU-GCUGUGGGAACCCACU
>J01889.1/1-119
CGUGGUGUACUUAGGGGUGACCGCUUGGGAAACCACG
>X02028.1/1-117
CCAAUGGUACUUGCCCGCAGGGAGCCGGGAGAGUAGG
>X07545.1/505-619
AGAACGC-G-UGAGCCGAGAGGCCUCGCAGCGUUCUG
>X16851.1/1-119
CCUGGUGUACUUGGGGGAGACCGCCUGGGAAACCAGG
>X52049.1/2-120
CGAGAAGUACUGGAGGGUGACCUUCCGGGAAUCCUCG
>AF134704.1/5562-5676
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>AL139074.2/44743-44859
GUGAUG-UACUACGCUUACUGGCAGGGGGAAAGUAGC
>X15364.1/6601-6721
UGUGGGGUACUGCGGU-UUU-GCUGUGGGAACCCAUU
>X05528.1/1-121
CCCAGGGUACUGCGCAGGGAUGACGCUGGAAUCUGGG
>M34764.1/3-118
CCGAUG-UAGUGUGCCGUU-UGCCAUGCGAAAGUAGG
>Z11823.1/1-116
CCGAUGGUAGUUGGGCAU-UGCCCCUGCGAGAGUAGG
>X02628.1/2-114
CCGAUG-UAGUGGAC--GGAC-GUCUGUGAAAGUAGG
>M25115.1/1-122
CCCGGAGUACUGGGGGGGGACCGCCCGGGAAUCCUUA
>X00071.1/1-118
CUCAGUGUACUGCGGGGGGACCACGCGGGAACCUGAG
>X13005.1/1-116
CCGAUGGUAGUUGGGGGUUUCCCCCUGUGAGAGUAGG
>AJ131600.1/3-115
CCGAUG-UAGUGCG---GAUUCCCGUGUGAAAGUAGG
>X06687.1/3-118
CCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGG
>M38645.1/2-120
CGCCACGUAACAGGUAGUAAUAACCUGUGAACUGGUG
>X00991.1/1-118
CCGGGUGUACCUGGGGGUGACCGCCUGGGAAACCCGG
>M76569.1/4-118
CCUAUG-UACGUUGCU-UAA-GCCACGGGAAAGUCGG
>L37445.1/4-118
CCGAUGGUACUAACCU-GAA--GCGUUGGAAAGUAGG
>AB001721.1/2735-2851
CUGAUGGUACUAUGGGUUCGCUGCAUGGGAGAGUAGG
>Z50069.1/4-120
CUGAUGGUACUGCAC-GACAGGGUGUGGGAGAGUAAG
>D10533.1/1-120
CCUGACGUAGUGUAGGGAGACCAUACGCGAACUCAGG
>M34768.1/3-117
CCAAUGGUACUUCGCU-UAA-GACGCGGGAGAGUAGG
>M10432.1/1-119
CCGGAGGUACUGGGGGGUGACCUCCCGGGAAUCCCGG
>U05019.1/544-658
AGAGGGC-G-UGGGCCGAGAGGGCCCGCAGCUCUCUG
>X01589.1/1-117
CCGAGA-UACUGGGGGGCAGCCUCCUGGGAAAGUAGG

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Sequence type:

DNA

RNA

automatic guess

2. Secondary Structure in bracket notation (optional):

3. Customize generated output (optional):

Lower Cutoff:	bits

Upper cutoff:	bits

Standard Deviation Cutoff:

Error bars:	On	Off

Reading frame:

Collapse wrt #:

2D Sequence logo:	vertical	flat	none

2D Logo characters:	standard	none

3D logo characters:	standard	none

Color mode:	standard	rainbow

Optimize for 3D printing:

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Useful Links:

Link to the Rfam entry of tRNA
For an explanation of the generated output and help converning VRML and JVX please see our help page.
If you want to pick up a previously computed result, click here.