CorreLogo Submission Form

CorreLogo Submission Form

3D sequence logos of RNA and DNA alignments


Quickstart:

All you probably have to do to obtain a 3D sequence logo from the CorreLogo server is to paste a sequence alignment in FASTA format into below text area and click "Submit Query" at the bottom of this page. For an even easier test run, you can use our example. If you want to customize the output, enter values into the sections two and three the form below. For more detailed information and an explanation of the output please see our help page. If you want to pick up a previously computed result, please use the file retriever web server.

New: RnaJunction database: A database of RNA junctions and kissing loops.


1. Please paste DNA or RNA sequence alignment in FASTA format:

Examples: tRNA anticodon tRNA

DNARNAautomatic guess


2. (optional):


3. Customize generated output (optional):

bits
bits


On Off
:


vertical flat none
standard none


standard none


standard rainbow



Page with example sequences


Useful Links:

For an explanation of the generated output and help converning VRML and JVX please see our help page.
If you want to pick up a previously computed result, click here.

New: RnaJunction database: A database of RNA junctions and kissing loops.

Go to CorreLogo Homepage


Contact: Eckart Bindewald